Usage examples of the phyloFlash pipeline applied to shotgun metagenomic data sets. The phyloFlash software is available from https://github.com/HRGV/phyloFlash. Examples were generated with phyloFlash v3.3b
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Summary: Microorganisms are ubiquitous in nature and constitute intrinsic parts of almost every ecos...
<p>The Shotgun Metagenome Annotation Pipeline (ShotMAP) is an end-to-end metagenome annotation and a...
Usage example for phyloFlash, comparison of multiple metagenomes by SSU rRNA taxonomic profile. Th...
Small-subunit ribosomal RNA reference database from SILVA release 138.1, formatted for use with phyl...
Small-subunit ribosomal RNA reference database from SILVA release 138, formatted for use with phyloF...
Shotgun metagenomic sequencing does not depend on gene-targeted primers or PCR amplification; thus, ...
16S rRNA sequences generated from shotgun metagenome data. The PhyloFlash file contain contigs assem...
Summary: Analyzing the functional profile of a microbial community from unannotated shotgun sequenci...
<p>These files are supplementary data for the following manuscript:</p> <p><strong>Darling AE, Jospi...
Contains fulltext : 171445.pdf (Publisher’s version ) (Open Access)Analyzing the f...
Shallow shotgun pilot report. Report with figures relating to the shallow shotgun pilot study descri...
Microorganisms are ubiquitous in nature and constitute intrinsic parts of almost every ecosystem. A ...
Datasets used for testing MetaCRAM. This file has detailed descriptions of the 5 datasets used for t...
<p>Supplemental files and data from the manuscript </p> <p>Building a phylogenomic pipeline for the ...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Summary: Microorganisms are ubiquitous in nature and constitute intrinsic parts of almost every ecos...
<p>The Shotgun Metagenome Annotation Pipeline (ShotMAP) is an end-to-end metagenome annotation and a...
Usage example for phyloFlash, comparison of multiple metagenomes by SSU rRNA taxonomic profile. Th...
Small-subunit ribosomal RNA reference database from SILVA release 138.1, formatted for use with phyl...
Small-subunit ribosomal RNA reference database from SILVA release 138, formatted for use with phyloF...
Shotgun metagenomic sequencing does not depend on gene-targeted primers or PCR amplification; thus, ...
16S rRNA sequences generated from shotgun metagenome data. The PhyloFlash file contain contigs assem...
Summary: Analyzing the functional profile of a microbial community from unannotated shotgun sequenci...
<p>These files are supplementary data for the following manuscript:</p> <p><strong>Darling AE, Jospi...
Contains fulltext : 171445.pdf (Publisher’s version ) (Open Access)Analyzing the f...
Shallow shotgun pilot report. Report with figures relating to the shallow shotgun pilot study descri...
Microorganisms are ubiquitous in nature and constitute intrinsic parts of almost every ecosystem. A ...
Datasets used for testing MetaCRAM. This file has detailed descriptions of the 5 datasets used for t...
<p>Supplemental files and data from the manuscript </p> <p>Building a phylogenomic pipeline for the ...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Summary: Microorganisms are ubiquitous in nature and constitute intrinsic parts of almost every ecos...
<p>The Shotgun Metagenome Annotation Pipeline (ShotMAP) is an end-to-end metagenome annotation and a...
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